If a normal user can not shutdown system change the policy to resolve the issue.

* Change the section relating to shutdown when others are logged in from

Edit the file /usr/share/polkit-1/actions/org.freedesktop.consolekit.policy using your favorite text editor. You will need root permission

Defaults settings

<action id="org.freedesktop.consolekit.system.stop-multiple-users">
    <description>Stop the system when multiple users are logged in</description>
    <message>System policy prevents stopping the system when other users are logged in</message>
    <defaults>
      <allow_inactive>no</allow_inactive>
      <allow_active>auth_admin_keep</allow_active>
    </defaults>
  </action>

To change

<action id="org.freedesktop.consolekit.system.stop-multiple-users">
    <description>Stop the system when multiple users are logged in</description>
    <message>System policy prevents stopping the system when other users are logged in</message>
    <defaults>
      <allow_inactive>no</allow_inactive>
      <allow_active>yes</allow_active>
    </defaults>
  </action>

* And the section relating to rebooting when others are logged in from From

<action id="org.freedesktop.consolekit.system.restart-multiple-users">
    <description>Restart the system when multiple users are logged in</description>
    <message>System policy prevents restarting the system when other users are logged in</message>
    <defaults>
      <allow_inactive>no</allow_inactive>
      <allow_active>auth_admin_keep</allow_active>
    </defaults>
  </action>

To

<action id="org.freedesktop.consolekit.system.restart-multiple-users">
    <description>Restart the system when multiple users are logged in</description>
    <message>System policy prevents restarting the system when other users are logged in</message>
    <defaults>
      <allow_inactive>no</allow_inactive>
      <allow_active>yes</allow_active>
    </defaults>
  </action>